Systematic evaluation of spliced alignment programs for RNA-seq data.
Non Renseigné
,
Tyler Alioto
,
Jonas Behr
,
Regina Bohnert
,
Davide Campagna
,
et al.
Journal articles
hal-00909047v1
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Computing Genomic Distances: An Algorihtmic Viewpoint
Guillaume Fertin
,
Irena Rusu
Wiley Science.
Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications , Wiley Science, pp.773-798, 2011,
⟨10.1002/9780470892107.ch34⟩
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hal-00606146v1
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Complex update strategies for Probabilistic Boolean Networks
Théo Merle
,
Jérémie Bourdon
7th Workshop on Computational Systems Biology , Jun 2010, Luxembourg, France. pp.4
Conference papers
hal-00480366v1
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Finding Common Structured Patterns in Linear Graphs
Guillaume Fertin
,
Danny Hermelin
,
Romeo Rizzi
,
Stéphane Vialette
Journal articles
hal-00482850v1
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The topological fortress of termites
Andrea Perna
,
Pascale Kuntz
,
Sergi Valverde
,
Jacques Gautrais
,
Guy Theraulaz
,
et al.
Lecture Notes in Computer Science , 2008, 5151, pp.165-173
Journal articles
hal-00318997v1
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Integrating heterogeneous knowledges for understanding biological behaviors: a probabilistic approach
Jérémie Bourdon
,
Damien Eveillard
,
Samuel Gabillard
,
Theo Merle
2007
Preprints, Working Papers, ...
hal-00199362v1
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A Pseudo-Boolean programming approach for computing the breakpoint distance between two genomes with duplicate genes
Sébastien Angibaud
,
Guillaume Fertin
,
Irena Rusu
,
Annelyse Thevenin
,
Stéphane Vialette
5th RECOMB Comparative Genomics Satellite Workshop (RECOMB-CG 2007) , 2007, San Diego, United States. pp.16-29
Conference papers
hal-00417902v1
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Comparison of Spectra in Unsequenced Species
Freddy Cliquet
,
Guillaume Fertin
,
Irena Rusu
,
Dominique Tessier
Conference papers
hal-00416462v1
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How Pseudo-Boolean Programming can help Genome Rearrangement Distance Computation
Sébastien Angibaud
,
Guillaume Fertin
,
Irena Rusu
,
Stéphane Vialette
4th RECOMB Comparative Genomics Satellite Workshop (RECOMB-CG 2006) , 2007, Montréal, Canada. pp.75-86
Conference papers
hal-00418258v1
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Semantics of Biological Regulatory Networks
Gilles Bernot
,
Franck Cassez
,
Jean-Paul Comet
,
Franck Delaplace
,
Céline Müller
,
et al.
Journal articles
hal-00339588v1
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Factor d-Domatic Colorings of Graphs
Noga Alon
,
Guillaume Fertin
,
Arthur L. Liestman
,
Thomas C. Shermer
,
Ladislav Stacho
Discrete Mathematics , 2003, 262 (1--3), pp.17--25
Journal articles
hal-00442418v1
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Compounding of Gossip Graphs
Guillaume Fertin
,
Roger Labahn
Networks , 2000, 36 (2), pp.126--137
Journal articles
hal-00442427v1
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POGG: Integrating qualitative and quantitative data of macromolecular networks. A probabilistic toolbox
Etienne Giraudet
,
Eric Docet
,
Jérémie Bourdon
2007
Other publications
hal-00445610v1
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Tractability and approximability of maximal strip recovery
Laurent Bulteau
,
Guillaume Fertin
,
Minghui Jiang
,
Irena Rusu
Journal articles
hal-00700598v1
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Computational Discovery of Dynamic Cell Line Specific Boolean Networks from Multiplex Time-Course Data
Misbah Razzaq
,
Loïc Paulevé
,
Anne Siegel
,
Julio Saez-Rodriguez
,
Jérémie Bourdon
,
et al.
Journal articles
hal-01897020v1
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Forests of latent tree models for the detection of genetic associations
Christine Sinoquet
,
Raphaël Mourad
,
Philippe Leray
International Conference on Bioinformatics Models, Methods and Algorithms (BIOINFORMATICS 2012) , Feb 2012, Vilamoura, Portugal. pp.1-10,
⟨10.5220/0003703400050014⟩
Conference papers
hal-00637500v1
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Refining Dynamics of Gene Regulatory Networks in a Stochastic π-Calculus Framework
Loïc Paulevé
,
Morgan Magnin
,
Olivier Roux
Journal articles
hal-00397235v2
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On the Power of Uncertainties in Microbial System Modeling: No Need To Hide Them Anymore
Benoît Delahaye
,
Damien Eveillard
,
Nicholas Bouskill
Journal articles
hal-01658218v1
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Concretizing the Process Hitting into Biological Regulatory Networks
Maxime Folschette
,
Loïc Paulevé
,
Katsumi Inoue
,
Morgan Magnin
,
Olivier Roux
Conference papers
hal-00704569v2
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Maximal Strip Recovery Problem with Gaps: Hardness and Approximation Algorithms
Laurent Bulteau
,
Guillaume Fertin
,
Irena Rusu
Journal of Discrete Algorithms , 2013, 19, pp.1-22
Journal articles
hal-00826876v1
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Bacterial syntenies: an exact approach with gene quorum.
Yves-Pol Deniélou
,
Marie-France Sagot
,
Frédéric Boyer
,
Alain Viari
Journal articles
hal-00746864v1
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Mechanically induced development and maturation of human intestinal organoids in vivo
Holly Poling
,
David Wu
,
Nicole Brown
,
Michael Baker
,
Taylor Hausfeld
,
et al.
Journal articles
hal-01816387v1
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Combining graph and flux-based structures to decipher phenotypic essential metabolites within metabolic networks
Julie Laniau
,
Clémence Frioux
,
Jacques Nicolas
,
Caroline Baroukh
,
Maria-Paz Cortés
,
et al.
Journal articles
hal-01635688v1
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Temporal constraints of a gene regulatory network: refining a qualitative simulation
Jamil Ahmad
,
Jérémie Bourdon
,
Damien Eveillard
,
Jonathan Fromentin
,
Olivier Roux
,
et al.
Journal articles
istex
hal-00423353v1
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Hard problems in similarity searching
Christophe Moan
,
Irena Rusu
Journal articles
istex
hal-00455436v1
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Targeting human Rad51 by specific DNA aptamers induces inhibition of homologous recombination.
Susan F Martinez
,
Axelle Renodon-Cornière
,
Julian Nomme
,
Damien Eveillard
,
Fabrice Fleury
,
et al.
Journal articles
istex
hal-00626711v1
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Building and analysing an integrative model of HIV-1 RNA alternative splicing
Alexander Bockmayr
,
Arnaud Courtois
,
Damien Eveillard
,
Myriam Vezain
International Conference on Computational Methods in Systems Biology - CMSB 2004 , May 2004, Paris/France, pp.43--57,
⟨10.1007/b107287⟩
Conference papers
inria-00000917v1
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An expert-based approach for the identification of remote homologs
Nicolas Beaume
,
Gérard Ramstein
,
Yannick Jacques
WCSB , Nov 2008, Leipzig, Germany. pp.17-20
Conference papers
hal-00421952v1
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SNPShuttle: bi-directional scan of SNP arrays to gain accuracy in missing genotype inference
Christine Sinoquet
Proc. Seventh Asia-Pacific Bioinformatics Conference, APBC2009, ISBN 978-7-302-19048-6 , Jan 2009, Beijing, China. pp.915-925
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hal-00423431v1
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Modélisation des dépendances locales entre SNP à l'aide d'un réseau bayésien
Raphaël Mourad
,
Christine Sinoquet
,
Philippe Leray
Proc. SFC'09, XVIth Join Meeting of the French Society of Classification, actes des 16èmes rencontres de la Société Francophone de Classification , Sep 2009, Grenoble, France. pp.169-172
Conference papers
hal-00423461v1
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