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Complex update strategies for Probabilistic Boolean Networks

Théo Merle , Jérémie Bourdon
7th Workshop on Computational Systems Biology, Jun 2010, Luxembourg, France. pp.4
Conference papers hal-00480366v1

Semantics of Biological Regulatory Networks

Gilles Bernot , Franck Cassez , Jean-Paul Comet , Franck Delaplace , Céline Müller , et al.
Electronic Notes in Theoretical Computer Science, 2007, 180, pp.3--14. ⟨10.1016/j.entcs.2004.01.038⟩
Journal articles hal-00339588v1
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Modélisation hybride temporelle et analyse par contraintes des réseaux de régulation biologiques

Jonathan Fromentin
Modélisation et simulation. Ecole Centrale de Nantes (ECN), 2009. Français. ⟨NNT : ⟩
Theses tel-00443781v1
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Mathematical Modeling of HIV Dynamics After Antiretroviral Therapy Initiation: A Review

Pablo S. Rivadeneira , Claude H. Moog , Guy-Bart Stan , Cécile Brunet , François Raffi , et al.
BioResearch Open Access, 2014, 3 (5), pp.233-241. ⟨10.1089/biores.2014.0024⟩
Journal articles hal-01095318v1
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Refining Dynamics of Gene Regulatory Networks in a Stochastic π-Calculus Framework

Loïc Paulevé , Morgan Magnin , Olivier Roux
Transactions on Computational Systems Biology, 2011, XIII, pp.171-191. ⟨10.1007/978-3-642-19748-2_8⟩
Journal articles hal-00397235v2

Deciphering transcriptional regulations coordinating the response to environmental changes

Vicente Acuña , Andrés Aravena , Carito Guziolowski , Damien Eveillard , Anne Siegel , et al.
BMC Bioinformatics, 2016, 17 (1), pp.129-42. ⟨10.1186/s12859-016-0885-0⟩
Journal articles hal-01260866v1
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Concretizing the Process Hitting into Biological Regulatory Networks

Maxime Folschette , Loïc Paulevé , Katsumi Inoue , Morgan Magnin , Olivier Roux
Computational Methods in Systems Biology, Oct 2012, London, United Kingdom. p. 166-186, ⟨10.1007/978-3-642-33636-2_11⟩
Conference papers hal-00704569v2
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Bacterial syntenies: an exact approach with gene quorum.

Yves-Pol Deniélou , Marie-France Sagot , Frédéric Boyer , Alain Viari
BMC Bioinformatics, 2011, 12, pp.193. ⟨10.1186/1471-2105-12-193⟩
Journal articles hal-00746864v1

Fuelling flight in a parasitic wasp: which energetic substrate to use?

Isabelle Amat , Sébastien Besnard , Vincent Foray , Perrine Pelosse , Carlos Bernstein , et al.
Ecological Entomology, 2012, 37 (6), pp.480-489. ⟨10.1111/j.1365-2311.2012.01388.x⟩
Journal articles istex hal-02333295v1

Microarchitecture of irradiated bone: comparison with healthy bone

Pauline Bléry , Yves Amouriq , Jeanpierre Guédon , Paul Pilet , Nicolas Normand , et al.
SPIE Medical Imaging, Feb 2012, San Diego, United States. pp.831719, ⟨10.1117/12.911375⟩
Conference papers hal-00716917v1

Temporal constraints of a gene regulatory network: refining a qualitative simulation

Jamil Ahmad , Jérémie Bourdon , Damien Eveillard , Jonathan Fromentin , Olivier Roux , et al.
BioSystems, 2009, pp.10.1016/j.biosystems.2009.05.002. ⟨10.1016/j.biosystems.2009.05.002⟩
Journal articles istex hal-00423353v1

Selected papers from the Computational Methods in Systems Biology 2015 conference

Jérémie Bourdon , Olivier Roux
BioSystems, 149, pp.1-2, 2016, ⟨10.1016/j.biosystems.2016.10.006⟩
Special issue hal-02469955v1

A Relevant Glucose-Insulin Model: Validation using Clinical Data

Nicolas Magdelaine , Lucy Chaillous , Isabelle Guilhem , Jean-Yves Poirier , Fournier-Guilloux Anne-Laure , et al.
Diabetes Technology and Therapeutics, 2016, 18(S1), pp.A93
Journal articles hal-01277046v1
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Fluorescence blind structured illumination microscopy: a new reconstruction strategy

S. Labouesse , Marc Allain , A. Negash , P. Liu , A. Sentenac , et al.
IEEE International Conference on Image Processing, IEEE, Sep 2016, Phoenix, United States
Conference papers hal-01264977v2
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Thomas Vincent , Laurent Risser , Philippe Ciuciu , J. Idier
Conference papers cea-00470636v1

Virtual mitochondrion: towards an integrated model of oxidative phosphorylation complexes and beyond.

Jean-Pierre Mazat , Jonathan Fromentin , Margit Heiske , Christine Nazaret , Stéphane Ransac
Biochemical Society Transactions, 2010, 38 (5), pp.1215-9. ⟨10.1042/BST0381215⟩
Journal articles hal-00526684v1

Driving around bends with manipulated eye-steering coordination.

Franck Mars
Journal of vision (Charlottesville, Va.), 2008, 8 (11), pp.10.1-11. ⟨10.1167/8.11.10⟩
Journal articles hal-00394670v1

Post-enquête : Conditions de travail à l'hôpital : Les effets de l'accréditation et des mesures d'amélioration sur la qualité des soins sur l'activité des personnels soignants

Jorge Muñoz , Adeline Raymond , Dominique Bertrand
Reports hal-00665720v1
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Sequential Decoding of Intramuscular EMG Signals via Estimation of a Markov Model

Jonathan Monsifrot , Eric Le Carpentier , Yannick Aoustin , Darion Farina
IEEE Transactions on Neural Systems and Rehabilitation Engineering, 2014, 22 (5), pp.1. ⟨10.1109/TNSRE.2014.2316547⟩
Journal articles hal-01024878v1
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Andrea Espinel Rojas , Pablo S. Rivadeneira , Vicente Costanza , Carlos Amorena
CCS 2012: 4th International Interdisciplinary Chaos Symposium on Chaos and Complex Systems, Apr 2012, Antalya, Turkey
Conference papers hal-00718084v1
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Revisiting the Training of Logic Models of Protein Signaling Networks with a Formal Approach based on Answer Set Programming

Santiago Videla , Carito Guziolowski , Federica Eduati , Sven Thiele , Niels Grabe , et al.
CMSB - 10th Computational Methods in Systems Biology 2012, D. Gilbert and M. Heiner, Oct 2012, London, United Kingdom. pp.342-361, ⟨10.1007/978-3-642-33636-2_20⟩
Conference papers hal-00737112v2
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Static Analysis of Boolean Networks Based on Interaction Graphs: A Survey

Loïc Paulevé , Adrien Richard
2nd International Workshop on Static Analysis and Systems Biology (SASB 2011), Sep 2011, Venice, Italy. pp.93-104, ⟨10.1016/j.entcs.2012.05.017⟩
Conference papers hal-00714476v1
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Topological fixed points in Boolean networks

Loïc Paulevé , Adrien Richard
Comptes rendus de l'Académie des sciences. Série I, Mathématique, 2010, 348 (15-16), pp.825-828. ⟨10.1016/j.crma.2010.07.014⟩
Journal articles hal-00510892v1

Joint analysis of flow cytometry data and fluorescence spectra as a non-negative array factorization problem

David Brie , Rémi Klotz , Sebastian Miron , Saïd Moussaoui , Christian Mustin , et al.
Chemometrics and Intelligent Laboratory Systems, 2014, 137, pp.21-32. ⟨10.1016/j.chemolab.2014.06.003⟩
Journal articles hal-01020580v1
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A variable reference trajectory for model-free glycemia regulation

Taghreed Mohammad Ridha , Claude Moog , Emmanuel Delaleau , Michel Fliess , Cédric Join
SIAM Conference on Control & its Applications, SIAM CT15, Jul 2015, Paris, France. pp.60-67
Conference papers hal-01141268v1
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Constraints Programming for Unifying Gene Regulatory Networks Modeling Approaches

Damien Eveillard , Jonathan Fromentin , Olivier Roux
Workshop on Constraint Based Methods for Bioinformatics (WCB08), 2008, Paris, France. pp.10
Conference papers hal-00277104v1

Development of a novel image-based program to teach narrow-band imaging

Cédric Dumas , David Fielding , Timothy Coles , Norm Good
Therapeutic Advances in Respiratory Disease, 2016, 10 (4), pp.300-309. ⟨10.1177/1753465816644166⟩
Journal articles hal-01495852v1

Comparison of Two Luminex Single-antigen Bead Flow Cytometry Assays for Detection of Donor-specific Antibodies After Renal Transplantation

Dominique Bertrand , Fabienne Farce , Charlotte Laurent , Frédérique Hamelin , Arnaud François , et al.
Transplantation, 2019, 103 (3), pp.597-603. ⟨10.1097/TP.0000000000002351⟩
Journal articles hal-02316670v1

Static analysis of Biological Regulatory Networks dynamics using abstract interpretation

Loïc Paulevé , Morgan Magnin , Olivier Roux
Mathematical Structures in Computer Science, 2012, 22 (04), pp 651-685. ⟨10.1017/S0960129511000739⟩
Journal articles hal-00714481v1

Model Free Control for Type-1 Diabetes: A Fasting-Phase Study

Taghreed Mohammadridha , Claude H. Moog
9th IFAC Symposium on Biological and Medical Systems, IFAC, Aug 2015, Berlin, Germany. pp.76-81, ⟨10.1016/j.ifacol.2015.10.118⟩
Conference papers hal-01150739v1